PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 504aa    MW: 55515 Da    PI: 5.2778
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.3e-11169191426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+f+++tG Ck+G +CkF+H+
  XP_004515843.1 169 EDCSFYMKTGSCKFGFNCKFNHP 191
                     89********************8 PP

2zf-CCCH29.31.5e-09215237325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     + +C++++r+G Ck+G  CkF+H
  XP_004515843.1 215 QTECKYYQRSGGCKFGKACKFNH 237
                     679******************** PP

3zf-CCCH40.44.8e-13259282326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C++++rtG Ck+G++C+F+H+
  XP_004515843.1 259 EKECPYYMRTGSCKFGSNCRFNHP 282
                     689********************9 PP

4zf-CCCH29.31.5e-09392418127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+ff++tG Ck+ ++CkF+H++
  XP_004515843.1 392 PGEPECSFFLKTGDCKFKSNCKFHHPK 418
                     5799*********************96 PP

5zf-CCCH35.81.4e-11439464227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++r+G+Ck+G+ C+F H++
  XP_004515843.1 439 DQSICSHYSRYGICKFGPACRFDHPE 464
                     6789********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.249165193IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4165192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6166193IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8169191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4171190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798212240IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4212239IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7215237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5216239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4218239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939256284IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6256283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6257284IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10259282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5262281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164391419IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4391418IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7393418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5396420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037437465IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5437464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6438467IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8439464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4441465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEHSESDSVA VSYSKDPQSG SEVQQPSSPV DHPPPSDLNH AAEDEDALTE ELQNKLDLKS  60
KGEDEGVDET EDKVSNFDDG EQVCDEESVK GEEVVDGDSK GWDTNSWNDN VNEEVDGGRD  120
GYGYGSGYGG GYGDGYGYGD GYGYGDGVEK KEEKRNDGTH QFPLRPEAED CSFYMKTGSC  180
KFGFNCKFNH PIRRKNQAVK EKVREREEPA EKSGQTECKY YQRSGGCKFG KACKFNHTRG  240
FAAPISELNF LGLPIRLGEK ECPYYMRTGS CKFGSNCRFN HPDPTTVVGG DTKSGYGNGG  300
SISLQGVSQQ SVAPWSSSRK LNETPFVPMM ITPTQGLAPQ SSDWNGYKAP VYLSERIVHP  360
SSTYVMNKPT IETNVYMHHH KQISVEEFPE RPGEPECSFF LKTGDCKFKS NCKFHHPKNR  420
VARLPPCNLS DKGLPLRPDQ SICSHYSRYG ICKFGPACRF DHPENSLPLI PGLGQQSYTN  480
SASVQVTGMG GSTGANDVTI QQSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478740.0BT147874.1 Medicago truncatula clone JCVI-FLMt-22B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515843.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLG7JMP10.0G7JMP1_MEDTR; Uncharacterized protein
STRINGGLYMA17G13580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-134C3H family protein